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  lpjmlkit: A toolkit for operating LPJmL and model-specific data processing

Breier, J., Ostberg, S., Wirth, S. B., Hötten, D., Minoli, S., Stenzel, F., Müller, C. (2024): lpjmlkit: A toolkit for operating LPJmL and model-specific data processing. - Journal of Open Source Software, 9, 103, 5447.
https://doi.org/10.21105/joss.05447

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 Urheber:
Breier, Jannes1, Autor              
Ostberg, Sebastian1, Autor              
Wirth, Stephen Björn1, Autor              
Hötten, David1, Autor              
Minoli, Sara1, Autor              
Stenzel, Fabian1, Autor              
Müller, Christoph1, Autor              
Affiliations:
1Potsdam Institute for Climate Impact Research, ou_persistent13              

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 Zusammenfassung: The lpjmlkit R package (Breier et al., 2023) is an open source software that is developed for handling the open source dynamic global vegetation model (DGVM) LPJmL. It contains two main modules. One, LPJmL Runner, provides the functionality to create multiple model configurations and start the corresponding simulations either on a personal computer or on a high perfomance computing a (HPC) cluster with SLURM (Simple Linux Utility for Resource Management) support, in both cases requiring a working LPJmL installation. The other, LPJmL Data, offers a generic function that supports reading both simulation output and model input data in multiple file formats used by LPJmL. The associated data class LPJmLData contains both the data and the corresponding metadata to ensure data integrity within a single instance. LPJmLData objects act as data containers that provide modification functions such as subsetting or transformations of the data. LPJmLData objects can be exported into various other common R data formats. In addition to these modules, other functions are included to facilitate common use cases of LPJmL. This article introduces lpjmlkit, an R package that serves as an interface to LPJmL to simplify direct work with the model and to enable new generic software developments based on LPJmL simulations or data.

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Sprache(n): eng - Englisch
 Datum: 2023-03-272024-11-222024-11-222024-11-22
 Publikationsstatus: Final veröffentlicht
 Seiten: 6
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.21105/joss.05447
PIKDOMAIN: RD1 - Earth System Analysis
PIKDOMAIN: RD2 - Climate Resilience
PIKDOMAIN: RD3 - Transformation Pathways
Working Group: Terrestrial Safe Operating Space
Organisational keyword: RD1 - Earth System Analysis
Organisational keyword: RD2 - Climate Resilience
Organisational keyword: RD3 - Transformation Pathways
MDB-ID: No MDB - stored outside PIK (see locators/paper)
OATYPE: Diamond
 Art des Abschluß: -

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Titel: Journal of Open Source Software
Genre der Quelle: Zeitschrift, other, oa-diamond
 Urheber:
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Ort, Verlag, Ausgabe: -
Seiten: - Band / Heft: 9 (103) Artikelnummer: 5447 Start- / Endseite: - Identifikator: CoNE: https://publications.pik-potsdam.de/cone/journals/resource/journal-open-source-software
Publisher: Open Journals